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Leftover DNA can detect presence of pest fish in SEQ lakes

An emerging technology, which can detect trace amounts of DNA in water samples, has been trialled as a way to identify the presence of pest fish species in South East Queensland lakes. 
 

Seqwater Environmental Coordinator Nicolette Osborne takes a water sample at Hinze Dam using an eDNA sampling kit

Seqwater’s Environment, Heritage and Land Use Planning (EHLUP) Unit are trialling a technique that involves collecting water samples and screening for environmental DNA - or eDNA - to pick up on the traces of DNA that are left behind by living organisms in the water.

Seqwater Principal Environment, Heritage and Land Use Harry Gordon said eDNA methods offered a monitoring tool that had the potential to revolutionise conservation and ecology research.

“The concept of looking for the DNA present in an environment rather than looking for the organisms themselves provides an exciting opportunity for Seqwater,” Mr Gordon said. 

“The management and protection of biodiversity is linked to our ability to detect and monitor various species.  

“Traditional ecological survey techniques can present financial and logistical challenges.

“However, eDNA has the potential to offer a more cost and time efficient solution that also presents less of an impact on the environment being surveyed.

“The collection and analysis of eDNA data and associated documentation from ecological research can also assist in how Seqwater prioritises a range of operational activities such as habitat restoration and weed management.

Seqwater Environmental Coordinator Nicolette Osborne said as various organisms interacted with an environment, they expelled DNA which dispersed throughout their surroundings. 

“The eDNA approach works by collecting eDNA from water samples then matching the DNA present against databases. The specific technique used will depend on whether the aim is to identify the presence of a particular target species or to identify all species present” Ms Osborne said.  

To validate the new approach as a practical technique to benefit Seqwater’s activities and operations, Seqwater’s EHLUP Unit has been trailing the eDNA method and its application with a small-scale project to determine whether Tilapia pest fish were present upstream of the Hinze Dam. 

“Significant effort has been taken to maintain biosecurity defences against an invasion of Tilapia at Hinze Dam, including a decade of fishway operation,” Ms Osborne said. 

“By using eDNA technology, a simple monitoring program was able to provide a robust indication that the lake remained free of the noxious pest.

“These surveys offer exciting, new opportunities to determine the presence or absence of a species, to compliment conventional methods and enable far better insights into species distributions.” 

Ms Osborne said eDNA studies were increasing at a rapid pace across the globe, with countries in Europe already using it as a standard feature within the Environmental Impact Assessment process.

“New applications continue to be discovered. As well as fish species, there are also options to screen for birds, mammals, reptiles, amphibians, invertebrates – even human DNA.”
 

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Seqwater’s Environment, Heritage and Land Use Planning (EHLUP) Unit are trialling a technique that involves collecting water samples and screening for environmental DNA - or eDNA - to pick up on the traces of DNA that are left behind by living organisms in the water.  Seqwater Principal Environment, Heritage and Land Use Harry Gordon said eDNA methods offered a monitoring tool that had the potential to revolutionise conservation and ecology research.  “The concept of looking for the DNA present in an enviro

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